From 4b2495ca6dbe05a8d780aa682886ec96b313d809 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Beno=C3=AEt=20Sierro?= Date: Thu, 2 Sep 2021 16:01:11 +0200 Subject: [PATCH] fixed bug when submitting slurm job --- src/scgenerator/data/submit_job_template.txt | 2 +- src/scgenerator/scripts/slurm_submit.py | 4 +--- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/src/scgenerator/data/submit_job_template.txt b/src/scgenerator/data/submit_job_template.txt index 19842e3..8ba6cb9 100644 --- a/src/scgenerator/data/submit_job_template.txt +++ b/src/scgenerator/data/submit_job_template.txt @@ -48,5 +48,5 @@ do done #### call your code below -scgenerator {command} {configs_list} +scgenerator {command} {config} exit \ No newline at end of file diff --git a/src/scgenerator/scripts/slurm_submit.py b/src/scgenerator/scripts/slurm_submit.py index 435bd72..078a844 100644 --- a/src/scgenerator/scripts/slurm_submit.py +++ b/src/scgenerator/scripts/slurm_submit.py @@ -142,9 +142,7 @@ def main(): tmp_path = Path("submit tmp.sh") job_name = f"supercontinuum {final_name}" - submit_sh = template.format( - job_name=job_name, configs_list=" ".join(f'"{c}"' for c in args.config), **vars(args) - ) + submit_sh = template.format(job_name=job_name, **vars(args)) tmp_path.write_text(submit_sh) subprocess.run(["sbatch", "--test-only", str(tmp_path)])